Configuration apply previously required a separate native confirmation even in Agent Runtime Execute mode, and failed in clients without an approval callback. Use existing work-mode and tool authorization instead, preserving Ask read-only access and request-scoped plan validation. Update regression tests, tool descriptions and documentation.
Validation: 267 focused tests passed; typecheck and changed-file lint passed. Full tests timed out with failures in other modules; repository lint reported errors in unchanged files.
Release note: Execute 模式下通过 Agent Runtime 修改 GoodBuddy 配置不再额外弹出确认框，Ask 模式仍保持只读。
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